CellDesigner
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CellDesigner is a structured diagram editor for drawing gene-regulatory and biochemical networks. Networks are drawn based on the process diagram, with graphical notation system proposed by Kitano, and are stored using the Systems Biology Markup Language (SBML), a standard for representing models of biochemical and gene-regulatory networks. Networks are able to link with simulation and other analysis packages through Systems Biology Workbench? (SBW?).
- 細胞内生化学的反応をモデル化するソフトウェア
対応プラットフォーム
以下のOSが動作するコンピュータ。
- Windows XP(以降)*
- Mac OS X (10.4以降)**
- Linux with X Window System ( Fedora Core 4 以降) ***
*Windows Vista向けには32bitのインストーラーのみ。 **On MacOSX 10.4 or later, Java 1.5.0_03 or later is required. On Mac OS X 10.3, Java 1.4.2_05 or later is required. *** On Linux platform, due to the version of native libraries, Fedora Core 4 or later is recommended; some problems will arise if you use other than these.
CellDesignerのインストーラはJRE1.5..0_07-b03も含んでいるので、別途Javaをインストール必要はありません。
If SBW and its modules have already been installed, these modules are available. Especially time evolving simulation of editing models can be performed.
注意点
MacOSX LeopardへのインストールにはJavaのバージョンの関係上、いくつか問題があるが、 ターミナルにて下記コマンドを入力することで問題を回避可能。
cd /Applications/CellDesigner4.0.1/CellDesigner4.0.1.app/Contents/MacOS mv JavaApplicationStub JavaApplicationStub.bak cp /System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/MacOS/JavaApplicationStub .
